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Work-in-Progress

2024-2025 Schedule – Mondays 9am-10am
A weekly work-in-progress provides trainees with the opportunity to present their research results, develop communication skills, and receive feedback from colleagues. Our WIP presentation schedule is changing starting January 16th, 2023. In order to give more students an opportunity to present during the year, there will be two presentations on each designated Monday. Each presentation will last 20 minutes maximum, followed by a 10-minute question period.

2024PRESENTER 1TITLEPRESENTER 2TITLE
September 9, 2024ORIENTATION FOR NEW STAFF and STUDENTS
September 16, 2024NO WIP: CIHR GRANT APPLICATIONS
September 23, 2024RESP SEMINAR SPEAKER
September 30, 2024YONG JIN KWEON
MSc Grad Student
Jun Ding
Advancing cell type deconvolution of spatial transcriptomics with deep neural network, transfer learning and matrix factorization.RUI SUN
PhD Grad Student
James Martin


Poly I:C alleviates asthma-associated T helper 2
immunopathology via the induction of modulatory monocyte-derived macrophages.


October 7, 2024RESP SEMINAR SPEAKER
October 14, 2024NO WIP: THANKSGIVING
October 21, 2024KIRI STERN
PhD Grad Student
Simon Rousseau /
Amin Emad
Establishing a need for causal inference machine learning methods in scRNA-seq studies.EMILY WILSON
PhD Grad Student
Carolyn Baglole
AhR coordinates pulmonary response to inhaled cannabis products.
TUESDAY
October 22, 2024
RESP SPECIAL SEMINAR – POSTPONED
October 28, 2024HAJAROOBA GNANAGOBAL
PostDoc Fellow
Dao Nguyen
Transcriptomic response of airway epithelial cells to infection with intracellular Pseudomonas aeruginosa lacking Type 3 Secretion System (T3SS) function.LEONARDO JURADO
PhD Grad Student
Maziar Divangahi
POSTPONED to January 20, 2025
A fungal-derived adjuvant remarkably amplifies the antitumoral potency of BCG.
THURSDAY November 7, 2024INTERNATIONAL STEM CELL SYMPOSIUM
November 11, 2024SUMAIYA JUSAB
MSc Grad Student
Dao Nguyen
The role of the Type 3 secretion system on the long-term survival and proliferation of intracellular Pseudomonas aeruginosa in airway epithelial cells.ROJINE McVEA
MSc Grad Student
Elizabeth Fixman / Brian Ward
RSV to asthma: investigating the immunomodulatory role of IL-33 in inducing allergic airway disease.
November 18, 2024ANDREI BOGZA
PhD Grad Student
Irah King
Exploring the Impact of Intestinal Helminth Infection on Diet Induced Stunting.KAITLIN OLSEN
MSc Grad Student
Irah King
Investigating Transkingdom-Immune Interactions During Intestinal Helminth Infection.
November 25, 2024MARIEME DEMBELE
PhD Grad Student
Bruce Mazer
Immunoregulatory properties of IVIg and Tregitopes in murine models of asthma.JAYALAKSHMI JAYAN
MSc Grad Student
Larry Lands
Optimization of Liquid Handler parameters for the synthesis and characterization of mRNA Lipid Nanoparticles for the treatment of lung disease.
December 2, 2024RESP SEMINAR SPEAKER
December 9, 2024JU JING TAN
PostDoc Fellow
James Martin / Ryszard Grygorczyk
The Role of P2X7 Receptor in the Pathogenesis of Ventilator-Induced Lung Injury.JANA ABI RAFEH
MSc Grad Student
Bruce Mazer /
Salman Qureshi
The impact of artificial intelligence on parent education in oral immunotherapy (OIT).
December 16, 2024GUO JIANG
MSc Grad Student
Jun Ding
Graph Link Prediction Based Cell Alignment.NICOLE HEIMBACH
PhD Grad Student
Carolyn Baglole
AhR and cigarette smoke: Effects on lung macrophages.
December 23, 2024NO WIP: HAPPY HOLIDAYS!
2025
January 13, 2025RESP SEMINAR SPEAKER
January 20, 2025BOWEN ZHAO
MSc Grad Student
Jun Ding
scCobra: Contrastive cell embedding learning with domain-adaptation for single-cell data integration and harmonization. / scCobra : Apprentissage contrastif de l’intégration cellulaire avec adaptation au domaine pour l’intégration et l’harmonisation des données unicellulaires.LEONARDO JURADO
PhD Grad Student
Maziar Divangahi
A fungal-derived adjuvant remarkably amplifies the antitumoral potency of BCG. / Un adjuvant dérivé d’un champignon amplifie remarquablement la puissance antitumorale du BCG.
FRIDAY
January 24, 2025
RECRU SEMINAR SPEAKER
January 27, 2025JÉRÔME BÉDARD-MATTEAU
PhD Grad Student
Simon Rousseau
The Th17 inflammation axis as a potential mediator of persistent fatigue symptom in Long-Covid. / L’axe d’inflammation Th17 comme médiateur potentiel du symptôme de fatigue persistante chez le Long-Covid.MONICA CELLA
PhD Grad Student
Dao Nguyen
Development of plasmid-host DNA fixation method for metagenomic sequencing analyses. / Développement d’une méthode de fixation de l’ADN des plasmides pour l’analyse métagénomique.
February 3, 2025RESP SEMINAR SPEAKER
February 10, 2025NO WIP: RI STAT HOLIDAY
February 17, 2025
PRESENTATIONS POSTPONED
CLARA MacMAHON
PhD Grad Student
Irah King
Exploring the relationship between hypercholesterolemia, systemic inflammation, and the gut microbiome. / Exploration de la relation entre l’hypercholestérolémie, l’inflammation systémique et le microbiome intestinal.PATRICK GREISS
PhD Grad Student
Carolyn Baglole
POSTPONED TO MARCH 31
The effect of cannabis smoke exposure on the immune response to Influenza A Infection. / L’effet de l’exposition à la fumée de cannabis sur la réponse immunitaire à l’infection par la grippe A.
February 24, 2025MIROSLAV ZHAO
PhD Grad Student
Jun Ding
Cross-protocol data conversion using deep generative learning. / Conversion de données entre protocoles à l’aide de l’apprentissage génératif profond.AHMED SAIF
MSc Grad Student
Maziar Divangahi
Targeting Central Trained Immunity via Adjuvants. / Cibler l’immunité centrale entraînée via des adjuvants.
March 3, 2025NO WIP: SPRING BREAK
March 10, 2025RESP SEMINAR SPEAKER
March 17, 2025KATELYN LIU
PhD Grad Student
Simon Rousseau
Investigating OLFM4 and SHC4 in Severe COVID-19: Implications in Immunothrombosis and Disease Progression. / Investigation d’OLFM4 et SHC4 dans la COVID-19 sévère : implications dans l’immunothrombose et la progression de la maladie.YUMIN ZHENG
PhD Grad Student
Jun Ding
Deep learning framework for reconstructing 3D single cell transcriptome. / Cadre d’apprentissage profond pour la reconstruction du transcriptome unicellulaire 3D.
March 24, 2025MATHEUS SCHULTZ
PhD Grad Student
Anne-Marie Lauzon
Leveraging modern biophysical approaches to study the effects of actin-binding proteins in the smooth muscle latch-state. / Exploiter des approches biophysiques modernes pour étudier les effets des protéines régulatrices de l’actine dans l’état latch des muscles lisses.JINGTAO WANG
PhD Grad Student
Jun Ding
DTPSP: A Deep Learning Framework for Optimized Time Point Selection in Time-Series Single-Cell Studies. / DTPSP : Un cadre d’apprentissage profond pour optimiser la sélection des points temporels dans les études unicellulaires en séries chronologiques.
FRIDAY
March 28, 2025
RECRU SEMINAR SPEAKER
March 31, 2025PATRICK GREISS
PhD Grad Student
Carolyn Baglole
The effect of cannabis smoke exposure on the immune response to Influenza A Infection. / L’effet de l’exposition à la fumée de cannabis sur la réponse immunitaire à l’infection par la grippe A.VISHVAK RAGHAVAN
PhD Grad Student
Jun Ding / Yue Li
Harnessing Agent-Based Frameworks in CellAgentChat to Unravel Cell-Cell Interactions from Single-Cell and Spatial Transcriptomics. / Exploiter les structures basées sur des agents dans CellAgentChat pour démêler les interactions cellule-cellule à partir de la transcriptomique unicellulaire et spatiale.
April 7, 2025RESP SEMINAR SPEAKER
April 14, 2025EISHA AHMED
PhD Grad Student
Bruce Mazer
Intrinsic differences in B cell subsets and compartments confer CpG-mediated IL-10 competence. / Les différences intrinsèques dans les types et les compartiments de cellules B confèrent une compétence IL-10 médiée par les CpG.SHAHIN BOLORI HANAFI
PostDoc Fellow
Maziar Divangahi
IL-22 enhances lung disease tolerance by activating autophagy in alveolar type 2 cells after influenza A virus infection. / IL-22 améliore la tolérance aux maladies pulmonaires en activant l’autophagie dans les cellules alvéolaires de type 2 après une infection par le virus de la grippe A.
April 21, 2025NO WIP: EASTER MONDAY
FRIDAY
April 25, 2025
RESPIRATORY RESEARCH DAY
April 28, 2025SOPHIE COLLINS
PostDoc Fellow
Benjamin Smith
Association of a Novel Index of Early-life Growth Conditions With Later-life Lung Structure and Function. / Corrélation d’un nouvel indice des conditions de croissance précoces avec la structure et la fonction pulmonaires plus tard dans la vie.JIAHUI TAN
MSc Grad Student
Jun Ding / Basil Petrof
Macrophage heterogeneity in Duchenne Muscular Dystrophy using scRNA-seq Technology. / Hétérogénéité des macrophages dans la dystrophie musculaire de Duchenne à l’aide de la technologie scRNA-seq.
May 5, 2025RESP SEMINAR SPEAKER
May 12, 2025JUSTINE MATHÉ
PostDoc Fellow
Dao Nguyen
Spatial Profiling of Host-Pathogen Interactions in Cystic Fibrosis Lung Explants. / Profilage spatial des interactions hôte-pathogène dans des explants pulmonaires de patients atteints de fibrose kystique.FARIYA WAHAB
MSc Grad Student
Carolyn Baglole
TBC
May 19, 2025NO WIP: VICTORIA DAY & ATS
May 26, 2025MATTHEW TIRANARDI
PhD Grad Student
Basil Petrof
TBCAVA NAPHIN
MSc Grad Student
Carolyn Baglole
TBC
FRIDAY
May 30, 2025
ANNUAL DOCTOR DOROTHY WISELBERG SEMINAR
June 2, 2025RESP SEMINAR SPEAKER
June 9, 2025HILARY HENDIN
PostDoc Fellow
Gregory Fonseca
TBCSIMRAN JAFFER
MSc Grad Student
Darcy Wagner
TBC
June 16, 2025SYDNEY JOY
PhD Grad Student
Inés Colmegna /
James Martin
TBCFATEMEH OSTADAN
PhD Grad Student
Bail Petrof
TBC