Position
Assistant Professor, Department of Medicine, McGill University
Research Interests
Our lab focuses on studying cell dynamics in various biological processes in many diseases (e.g., developmental disorder, pulmonary diseases, cancers). Decoding cell dynamics is essential for understanding the pathogenesis of diseases and finding novel therapeutics. The existence of enormous heterogeneity in those diseases makes it challenging to decipher the unknown.
The advancing single-cell technologies that profile individual cell states provide unprecedented opportunities to tackle this problem, which could drive biological discoveries and medical innovations in various fields (such as developmental and cancer biology). However, the single-cell data presents numerous new challenges in developing computational models that bridge the biomedical data and potential discoveries.
Our primary research is to develop machine learning approaches (particularly probabilistic graphical models) to jointly analyze, model, and visualize single-cell (and/or bulk) omics data (preferably longitudinal or spatial). Such computational models will be used to help us derive a deeper understanding of the cell dynamics in different biological systems, which will eventually benefit the public health with machine-learning driven new diagnostic and therapeutic strategies.
Jun Ding in the News
Nature commentary highlights the work of Jun Ding
Nature commentary highlights scSemiProfiler, UNAGI, and CellAgentChat, new computational tools developed by Jun Ding
December 16, 2024: Guo Jiang & Nicole Heimbach
December 16, 2024 Work in Progress: Guo Jiang (MSc with Jun Ding) and Nicole Heimbach (PhD with Carolyn Baglole)
January 20, 2025: Bowen Zhao & Ahmed Saif
January 20, 2025 Work in Progress: Bowen Zhao (MSc with Jun Ding) and Ahmed Saif (MSc with Maziar Divangahi)
February 24, 2025: Miroslav Zhao & Quazi Islam
February 24, 2025 Work-in-Progress: Miroslav Zhao (PhD with Jun Ding) and Quazi Islam (PhD with Carolyn Baglole)
A scalable, cost-effective solution for single-cell profiling
Dr. Jun Ding’s team has developed a groundbreaking tool, scSemiProfiler, to make single-cell sequencing more affordable and accessible.
MUHC Trottier Webster Innovation Award Goes to RESP Team
Congrats to Ben Smith, Jun Ding and Larry Lands! The team received the MUHC Trottier Webster Innovation Award for their work to repair damaged lungs in COPD.
Contact Information
Meakins-Christie Laboratories
RI-MUHC, Block E
Office EM3.2212
1001 Decarie Blvd.
Montreal QC H4A 3J1
Canada
Tel: 514-934-1934 Ext. 76172 (admin)
Fax: 514-933-3962
E-Mail: jun.ding [at] mcgill.ca
Education & Training
MSc (Electrical Engineering), University of Science and Technology of China, 2010
PhD (Computer Science), University of Central Florida, 2016
PDF (Computational Biology), Carnegie Mellon University, 2020